EVOLUTIONARY CHANGE OF RESTRICTION CLEAVAGE SITES AND PHYLOGENETIC INFERENCE
نویسندگان
چکیده
منابع مشابه
Evolutionary change of restriction cleavage sites and phylogenetic inference.
Mathematical formulas are developed for the evolutionary change of restriction cleavage sites in a DNA sequence, allowing unequal rates between transitional and transversional types of nucleotide substitution. Formulas are also developed for the probability of having a particular pattern of site changes among evolutionary lineages, such as parallel gains or losses of sites, and for inferring th...
متن کاملEvolutionary Change of Restriction Cleavage Sites and Phylogenetic Inference for Man and Apes1
A mathematical theory for the evolutionary change of restriction endonuclease cleavage sites is developed, and the probabilities of various types of restrictionsite changes are evaluated. A computer simulation is also conducted to study properties of the evolutionary change of restriction sites. These studies indicate that parsimony methods of constructing phylogenetic trees often make erroneou...
متن کاملEvolutionary change of restriction cleavage sites and phylogenetic inference for man and apes.
A mathematical theory for the evolutionary change of restriction endonuclease cleavage sites is developed, and the probabilities of various types of restriction-site changes are evaluated. A computer simulation is also conducted to study properties of the evolutionary change of restriction sites. These studies indicate that parsimony methods of constructing phylogenetic trees often make erroneo...
متن کاملLetter to the Editor Nonparametric Phylogenetic Inference from Restriction Cleavage Sites
Nei and Tajima (1985) recently have criticized my algorithms (Templeton 1983a, 19833) that make phylogenetic inference from restriction-site maps. The purpose of this letter is to address their criticisms and to examine the reasons for our difference of opinion concerning the range of validity of my algorithms. These points will also be illustrated by a worked example using Hawaiian Drosophila....
متن کاملPhylogenetic inference from conserved sites alignments.
Molecular sequences provide a rich source of data for inferring the phylogenetic relationships among species. However, recent work indicates that even an accurate multiple alignment of a large sequence set may yield an incorrect phylogeny and that the quality of the phylogenetic tree improves when the input consists only of the highly conserved, motif regions of the alignment. This work introdu...
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ژورنال
عنوان ژورنال: Genetics
سال: 1986
ISSN: 1943-2631
DOI: 10.1093/genetics/113.1.187